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varseek

Efficient variant screening of RNA-seq and DNA-seq data using k-mer-based alignment against a reference of known variants.

varseek has been downloaded 4,696 times in total on PyPI, including 439 in the last 30 days. The latest version is 0.1.1, released Aug 12, 2025.

Version0.1.1
Downloads
4.70k
LicenseBSD 2-Clause License Copyright (c) 2024, Pachter Lab Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
AuthorJoseph Rich
UpdatedAug 12, 2025
PyPI →

Downloads

Weekly, last 90d.
Includes CI traffic.

VersionsTotal0.*
Range
View
Granularity
Group by
CI traffic
Stack: OffCI: Included2 / 6 series
Selected total2.73k
4.7kAll-time
439Last 30 days
3Last 24 h
<0.01/sPer second

Version distribution

Share of downloads by released version. Computed over the last quarter.

  • 01

    0.2.1

    501 downloads
    36.6%
  • 02

    0.2.0

    429 downloads
    31.4%
  • 03

    0.1.1

    269 downloads
    19.7%
  • 04

    0.1.0

    93 downloads
    6.8%
  • 05

    0.0.1

    75 downloads
    5.5%

Guess the next day

Thirteen recent days of varseek downloads. Drag the green handle on the right to guess where day fourteen lands.

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